diff --git a/tests/boulder-integration.sh b/tests/boulder-integration.sh
index 38448bbf6..55d3d2fe4 100755
--- a/tests/boulder-integration.sh
+++ b/tests/boulder-integration.sh
@@ -33,21 +33,30 @@ common() {
         "$@"
 }
 
+export HOOK_TEST="/tmp/hook$$"
 CheckHooks() {
     EXPECTED="/tmp/expected$$"
-    echo "wtf.pre" > "$EXPECTED"
-    echo "wtf2.pre" >> "$EXPECTED"
-    echo "renew" >> "$EXPECTED"
-    echo "renew" >> "$EXPECTED"
-    echo "wtf.post" > "$EXPECTED"
-    echo "wtf2.post" >> "$EXPECTED"
+    if [ $(head -n1 $HOOK_TEST) = "wtf.pre" ]; then
+        echo "wtf2.pre" >> "$EXPECTED"
+        echo "renew" >> "$EXPECTED"
+        echo "renew" >> "$EXPECTED"
+        echo "wtf.post" >> "$EXPECTED"
+        echo "wtf2.post" >> "$EXPECTED"
+    else
+        echo "wtf.pre" >> "$EXPECTED"
+        echo "renew" >> "$EXPECTED"
+        echo "renew" >> "$EXPECTED"
+        echo "wtf2.post" >> "$EXPECTED"
+        echo "wtf.post" >> "$EXPECTED"
+    fi
+
     if cmp --quiet "$EXPECTED" "$HOOK_TEST" ; then
         echo Hooks did not run as expected\; got
         cat "$HOOK_TEST"
         echo Expected
         cat "$EXPECTED"
     fi
-    [ -f "$HOOK_TEST" ] && rm -f "$HOOK_TEST"
+    rm "$HOOK_TEST"
 }
 
 # We start a server listening on the port for the
@@ -55,7 +64,6 @@ CheckHooks() {
 python -m SimpleHTTPServer $http_01_port &
 python_server_pid=$!
 
-export HOOK_TEST="/tmp/hook$$"
 common --domains le1.wtf --preferred-challenges tls-sni-01 auth \
        --pre-hook 'echo wtf.pre >> "$HOOK_TEST"' \
        --post-hook 'echo wtf.post >> "$HOOK_TEST"'\
@@ -70,8 +78,8 @@ common --domains le2.wtf --preferred-challenges http-01 run \
 kill $python_server_pid
 
 common certonly -a manual -d le.wtf --rsa-key-size 4096 \
-    --manual-auth-hook ./tests/manual-http-auth.sh \
-    --manual-cleanup-hook ./tests/manual-http-cleanup.sh
+    --manual-auth-hook 'echo wtf2.auth >> "$HOOK_TEST" && ./tests/manual-http-auth.sh' \
+    --manual-cleanup-hook 'echo wtf2.cleanup >> "$HOOK_TEST" && ./tests/manual-http-cleanup.sh' \
     --pre-hook 'echo wtf2.pre >> "$HOOK_TEST"' \
     --post-hook 'echo wtf2.post >> "$HOOK_TEST"'